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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
378
ChIP-seq
171
single cell RNA-seq
total RNA-seq
126
ATAC-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
25
pCHi-C
17
DNase-seq
5
Hi-C
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
378
DNA binding
171
Transcription
170
DNA accessibility
29
DNA methylation
5
3D chromatin structure
Target of assay
190
histone
190
histone modification
184
control
105
broad histone mark
85
narrow histone mark
6
RNA binding protein
6
transcription factor
2
nucleotide modification
Date released
178
August, 2021
104
August, 2017
93
February, 2021
76
November, 2017
65
October, 2019
49
February, 2023
47
September, 2023
40
May, 2024
29
October, 2018
23
May, 2020
22
May, 2019
20
March, 2020
19
April, 2020
17
July, 2019
16
June, 2019
15
April, 2019
May, 2023
12
December, 2017
10
October, 2017
9
November, 2018
8
January, 2021
4
December, 2018
4
November, 2020
4
September, 2017
3
December, 2019
1
August, 2022
1
January, 2019
1
March, 2019
1
May, 2021
1
May, 2022
Available data
252
bam
207
bed narrowPeak
133
tagAlign
128
tsv
125
bigWig
97
txt
76
fastq
68
bigBed narrowPeak
64
xls
16
bed bed3+
16
bed bedMethyl
16
bed broadPeak
16
bigBed bedMethyl
16
bigBed broadPeak
6
csv
1
bedpe bed3+
Organism
869
Homo sapiens
Biosample type
872
tissue
365
primary cell
123
cell line
88
in vitro differentiated cells
7
stem cell
Organ
197
heart
144
kidney
110
brain
84
bone element
72
liver
71
pancreas
63
connective tissue
62
adipose tissue
60
blood vessel
60
vasculature
44
artery
23
limb
20
lung
19
musculature of body
11
nerve
11
spleen
7
eye
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
784
AMP
47
KPMP
22
T1D
19
LungMap
Genome assembly (visualization)
951
GRCh38
hg19
Lab
660
AMP-T2D consortium
78
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
22
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
1
Maike Sander, UCSD
Mark McCarthy, Oxford
Audit category:
86
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
assay_title!
total RNA-seq
assembly!
hg19
lab.title!
Mark McCarthy, Oxford
month_released!
May, 2023
BIOSAMPLE
ASSAY
872 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
DNase-seq
Hi-C
MeRIP-seq
snDrop-seq
RRBS
tissue
kidney
7
61
64
6
bone element
84
islet of Langerhans
40
25
7
4
1
4
liver
62
1
3
1
left cardiac atrium
40
18
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