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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
total RNA-seq
5
WGBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
Hi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
123
DNA binding
5
DNA methylation
1
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
1
Transcription
Target of assay
94
control
20
histone
20
histone modification
12
broad histone mark
9
transcription factor
8
narrow histone mark
4
recombinant protein
3
RNA binding protein
Date released
49
November, 2017
34
August, 2017
24
May, 2020
13
December, 2017
8
August, 2021
4
November, 2018
1
December, 2018
1
February, 2021
1
July, 2019
1
March, 2020
Available data
96
bam
75
fastq
44
tagAlign
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
2
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
vcf
Organism
136
Homo sapiens
Biosample type
72
tissue
62
cell line
1
in vitro differentiated cells
1
primary cell
Organ
213
pancreas
199
heart
169
kidney
152
epithelium
136
liver
100
brain
88
connective tissue
85
bone element
67
blood vessel
67
vasculature
63
adipose tissue
46
artery
23
limb
21
musculature of body
20
lung
14
blood
14
bodily fluid
11
nerve
11
spleen
8
embryo
8
eye
5
gonad
5
ovary
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
0
skeleton
Project
136
AMP
Genome assembly (visualization)
hg19
369
GRCh38
Lab
129
AMP-T2D consortium
7
Bing Ren, UCSD
Audit category:
1
missing controlled_by
assay_title!
total RNA-seq
assembly!
hg19
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
136 results
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ChIP-seq
WGBS
STARR-seq
pCHi-C
DNase-seq
Hi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
62
3
1
1
right lobe of liver
3
1
1
cell line
HepG2
56
1
2
1
1
1
in vitro differentiated cells
hepatocyte
1
primary cell
hepatocyte
1
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