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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
309
ChIP-seq
Assay category
309
DNA binding
Target of assay
309
transcription factor
88
recombinant protein
58
RNA binding protein
32
histone
32
histone modification
28
chromatin remodeller
16
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
201
November, 2017
56
November, 2018
25
December, 2018
14
January, 2019
7
October, 2019
5
February, 2021
1
November, 2019
Available data
309
bam
309
bed narrowPeak
309
bigWig
296
bigBed narrowPeak
296
fastq
32
bed broadPeak
32
bigBed broadPeak
5
tagAlign
Organism
309
Homo sapiens
Biosample type
309
cell line
93
tissue
37
in vitro differentiated cells
9
primary cell
Organ
245
liver
51
blood
51
bodily fluid
7
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
1
epithelium
1
pancreas
Project
309
AMP
Genome assembly (visualization)
352
hg19
309
GRCh38
Lab
309
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
inconsistent control
Audit category:
4
missing controlled_by
Audit category:
13
inconsistent control read length
6
inconsistent control run_type
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
309 results
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ChIP-seq
cell line
HepG2
245
GM12878
51
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
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