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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
569
ChIP-seq
173
DNase-seq
121
ATAC-seq
16
WGBS
16
small RNA-seq
6
single cell RNA-seq
Assay category
569
DNA binding
294
DNA accessibility
22
Transcription
16
DNA methylation
Target of assay
474
histone modification
473
histone
245
narrow histone mark
228
broad histone mark
92
transcription factor
26
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
161
June, 2019
132
October, 2019
89
May, 2019
69
August, 2017
64
April, 2019
64
August, 2021
57
November, 2017
45
October, 2018
40
May, 2024
36
December, 2017
29
July, 2019
22
November, 2018
20
November, 2019
19
May, 2020
14
October, 2017
11
May, 2023
8
February, 2021
6
April, 2018
6
January, 2019
3
December, 2018
2
March, 2019
2
March, 2020
2
September, 2017
Available data
821
bed narrowPeak
790
bigWig
781
bam
530
bigBed narrowPeak
200
bed bed3+
189
fastq
187
bed broadPeak
172
bigBed broadPeak
116
tagAlign
64
xls
22
tsv
16
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
895
Homo sapiens
Biosample type
901
tissue
376
primary cell
348
cell line
138
in vitro differentiated cells
3
stem cell
Organ
198
brain
179
heart
164
kidney
123
pancreas
101
blood vessel
101
vasculature
92
limb
89
liver
artery
39
musculature of body
27
adipose tissue
27
connective tissue
27
nerve
18
ureter
16
spleen
8
bone element
8
skeleton
3
eye
1
pituitary gland
Project
899
AMP
2
T1D
Genome assembly (visualization)
901
GRCh38
832
hg19
Lab
783
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
lab.title!
Klaus Kaestner, Upenn
organ_slims!
artery
BIOSAMPLE
ASSAY
901 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
tissue
kidney
20
13
75
liver
75
2
1
islet of Langerhans
25
1
22
6
left cardiac atrium
40
1
body of pancreas
26
4
4
2
2
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