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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
total RNA-seq
12
ATAC-seq
2
Capture-C
2
Hi-C
Assay category
18
DNA binding
12
DNA accessibility
2
3D chromatin structure
Target of assay
18
histone
18
histone modification
narrow histone mark
11
transcription factor
7
broad histone mark
1
RNA binding protein
Date released
210
November, 2017
101
August, 2017
89
May, 2021
73
October, 2019
63
May, 2019
62
December, 2017
62
November, 2018
49
April, 2018
48
July, 2018
47
July, 2019
45
February, 2023
45
May, 2020
42
April, 2019
39
May, 2022
35
November, 2019
34
August, 2021
34
October, 2018
31
September, 2018
30
December, 2018
29
February, 2021
18
January, 2019
16
March, 2020
12
June, 2019
9
October, 2017
8
February, 2018
7
September, 2017
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
November, 2020
Available data
30
bed narrowPeak
20
bigWig
16
bam
6
tagAlign
3
bed bed3+
2
hic
1
bedpe bed3+
Organism
34
Homo sapiens
Biosample type
19
in vitro differentiated cells
13
cell line
1
primary cell
1
tissue
Organ
14
liver
4
connective tissue
1
epithelium
1
kidney
Project
34
AMP
Genome assembly (visualization)
81
GRCh38
34
hg19
Lab
16
AMP-T2D consortium
13
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
1
Katalin Susztak, Upenn
assay_title!
total RNA-seq
files.file_type!
bed broadPeak
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
34 results
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Clear Filters
ChIP-seq
ATAC-seq
Capture-C
Hi-C
in vitro differentiated cells
neural progenitor cell
5
10
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
12
1
primary cell
hepatocyte
1
tissue
kidney
1
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