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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
19
ChIP-seq
6
ATAC-seq
3
small RNA-seq
2
DNase-seq
Assay category
19
DNA binding
8
DNA accessibility
3
Transcription
Target of assay
17
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
15
August, 2017
5
October, 2018
3
July, 2019
1
February, 2023
1
January, 2018
1
June, 2019
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
28
bigWig
26
bam
21
fastq
13
bed narrowPeak
10
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
3
tsv
2
bigBed broadPeak
1
tagAlign
Organism
30
Homo sapiens
Biosample type
29
tissue
1
primary cell
Organ
466
liver
328
pancreas
235
epithelium
159
brain
121
connective tissue
119
heart
118
kidney
107
vasculature
101
blood vessel
92
limb
69
musculature of body
55
blood
55
bodily fluid
39
artery
34
eye
30
adipose tissue
27
nerve
18
ureter
17
vein
15
embryo
14
spleen
12
bone element
12
skeleton
1
pericardium
1
pituitary gland
Project
30
AMP
Genome assembly (visualization)
30
hg19
28
GRCh38
Lab
30
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
total RNA-seq
lab.title!
Anna Gloyn, Oxford
BIOSAMPLE
ASSAY
30 results
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Clear Filters
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
tissue
white adipose tissue
12
omental fat pad
3
1
1
2
adipose tissue
1
3
subcutaneous adipose tissue
2
1
1
adipose tissue(adipose white tissue)
1
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
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