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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1305ChIP-seq
  • total RNA-seq
  • 261ATAC-seq
  • 186DNase-seq
  • 106single cell RNA-seq
  • 27Hi-C
  • 19RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 4pCHi-C
  • 2Capture-C
  • 1snATAC-seq
Assay category
  • 1305DNA binding
  • 453DNA accessibility
  • 124Transcription
  • 273D chromatin structure
  • 19DNA methylation
Target of assay
  • 784histone modification
  • 783histone
  • 487transcription factor
  • 411narrow histone mark
  • 371broad histone mark
  • 100RNA binding protein
  • 85recombinant protein
  • 36chromatin remodeller
  • 32control
  • 5other context
  • 5other post-translational modification
Date released
  • 281November, 2017
  • 201October, 2019
  • 187August, 2017
  • 187June, 2019
  • 141May, 2021
  • 97May, 2019
  • 77December, 2017
  • 72May, 2020
  • 71November, 2018
  • 65April, 2019
  • 49April, 2018
  • 48July, 2018
  • 47July, 2019
  • 46September, 2018
  • 45August, 2021
  • 45February, 2023
  • 45October, 2018
  • 39May, 2022
  • 39November, 2019
  • 30December, 2018
  • 29February, 2021
  • 21January, 2019
  • 19March, 2020
  • 16February, 2018
  • 13October, 2017
  • 7September, 2017
  • 3August, 2018
  • 3January, 2018
  • 3June, 2018
  • 3March, 2019
  • 3October, 2022
  • 2November, 2020
Available data
  • 1738bigWig
  • 1722bam
  • 1598bed narrowPeak
  • 963bigBed narrowPeak
  • 869fastq
  • 298bed broadPeak
  • 262bigBed broadPeak
  • 248bed bed3+
  • 238tagAlign
  • 126tsv
  • 22hic
  • 21bedpe bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1928Homo sapiens
Biosample type
  • 859tissue
  • 476primary cell
  • 426cell line
  • 170in vitro differentiated cells
  • 3stem cell
Organ
  • 466liver
  • 334pancreas
  • 235epithelium
  • 159brain
  • 121connective tissue
  • 119heart
  • 118kidney
  • 107vasculature
  • 101blood vessel
  • 92limb
  • 69musculature of body
  • 55blood
  • 55bodily fluid
  • 39artery
  • 34eye
  • 30adipose tissue
  • 27nerve
  • 18ureter
  • 17vein
  • 15embryo
  • 14spleen
  • 12bone element
  • 12skeleton
  • 1pericardium
  • 1pituitary gland
Project
  • 1843AMP
  • 88T1D
  • 3HPAP
Genome assembly (visualization)
  • 1934hg19
  • 1850GRCh38
  • 5hg18
Lab
  • 1744AMP-T2D consortium
  • 140Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 17Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 1Katalin Susztak, Upenn
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 87inconsistent ontology term
  • 28inconsistent control
  • 5audit script error
  • 1inconsistent replicate
Audit category:
  • 86missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
assay_title!
  • total RNA-seq
BIOSAMPLE
ASSAY

1934 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
Capture-C
snATAC-seq
tissue
liver83202111
islet of Langerhans314216211
heart left ventricle292311
kidney2013111
body of pancreas26422
primary cell
monocyte8415
CD8-positive, alpha-beta T cell332
pancreatic beta cell77121
pancreatic ductal cell13410
pancreatic acinar cell85121
cell line
HepG2322111
GM12878541
EndoC_BH11331
smooth muscle cell of the coronary artery48
Panc1611
in vitro differentiated cells
adipocyte48811
neural progenitor cell1210
hepatocyte14
pancreatic endoderm13
embryonic stem cell26
stem cell
hESC3
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