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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
101
single cell RNA-seq
88
ChIP-seq
57
ATAC-seq
49
snATAC-seq
47
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
106
DNA accessibility
105
Transcription
88
DNA binding
47
DNA methylation
1
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
134
May, 2022
102
May, 2021
47
September, 2023
September, 2020
19
April, 2020
18
February, 2021
18
February, 2023
16
January, 2021
7
August, 2020
5
March, 2023
3
March, 2020
Available data
134
zippedFastqFolder
95
bigWig
88
bam
88
bed narrowPeak
84
tagAlign
25
fastq
6
tsv
1
hic
Organism
364
Homo sapiens
Biosample type
268
primary cell
90
tissue
9
cell line
2
stem cell
Organ
118
pancreas
95
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
159
HPAP
139
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
96
GRCh38
88
hg19
Lab
159
Klaus Kaestner, Upenn
135
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
audit script error
3
inconsistent ontology term
assay_title!
total RNA-seq
audit.ERROR.category!
audit script error
award.project!
AMP
month_released!
September, 2020
BIOSAMPLE
ASSAY
369 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
84
1
Langerhans cell
45
21
pancreatic alpha cell
27
31
pancreatic beta cell
15
16
peripheral blood mononuclear cell
8
+ See 16 more…
tissue
kidney
47
islet of Langerhans
2
11
6
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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