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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
26
ChIP-seq
6
Hi-C
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
34
DNA accessibility
26
DNA binding
6
3D chromatin structure
6
DNA methylation
3
Transcription
Target of assay
33
histone
33
histone modification
20
broad histone mark
narrow histone mark
6
control
Date released
39
June, 2019
19
August, 2017
8
July, 2019
5
May, 2019
3
March, 2020
1
January, 2018
1
May, 2022
Available data
53
bigWig
49
bed narrowPeak
47
bam
41
bed broadPeak
41
bigBed narrowPeak
33
bed bed3+
33
bigBed broadPeak
10
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
tsv
2
bedpe bed3+
2
fastq
2
hic
Organism
76
Homo sapiens
Biosample type
67
tissue
9
primary cell
Organ
542
liver
467
pancreas
339
epithelium
281
heart
272
kidney
176
connective tissue
148
vasculature
143
blood vessel
138
brain
100
limb
97
bone element
80
adipose tissue
79
artery
76
musculature of body
68
blood
68
bodily fluid
39
eye
30
nerve
22
spleen
20
lung
18
ureter
15
embryo
15
vein
12
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
76
AMP
Genome assembly (visualization)
57
hg19
44
GRCh38
Lab
76
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
audit script error
assay_title!
total RNA-seq
audit.ERROR.category!
audit script error
month_released!
October, 2017
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
76 results
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DNase-seq
ChIP-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
15
4
1
1
1
muscle of leg
13
5
1
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
1
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primary cell
skeletal muscle satellite cell
5
1
skeletal muscle cell
1
1
1
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