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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
854
ChIP-seq
260
ATAC-seq
178
DNase-seq
171
single cell RNA-seq
87
RNA microarray
27
WGBS
25
pCHi-C
18
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
854
DNA binding
460
DNA accessibility
187
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
620
histone modification
619
histone
320
narrow histone mark
299
broad histone mark
187
control
49
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
220
October, 2019
179
August, 2021
173
August, 2017
163
June, 2019
115
May, 2019
101
February, 2021
82
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
47
September, 2023
46
July, 2019
40
May, 2022
40
May, 2024
31
March, 2020
26
November, 2018
21
December, 2017
21
November, 2019
19
October, 2017
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
954
bam
953
bed narrowPeak
825
bigWig
531
bigBed narrowPeak
234
tagAlign
227
fastq
211
bed broadPeak
191
bed bed3+
176
bigBed broadPeak
151
tsv
98
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1666
Homo sapiens
Biosample type
1674
tissue
797
primary cell
535
cell line
252
in vitro differentiated cells
10
stem cell
Organ
298
heart
249
kidney
244
brain
212
pancreas
164
liver
126
blood vessel
126
vasculature
115
limb
96
bone element
80
connective tissue
79
adipose tissue
77
musculature of body
71
artery
38
nerve
37
eye
25
spleen
18
ureter
13
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1603
AMP
47
KPMP
24
T1D
Genome assembly (visualization)
911
GRCh38
807
hg19
Lab
1423
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
inconsistent control
9
audit script error
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
audit.ERROR.category!
inconsistent control
audit.NOT_COMPLIANT.category!
missing controlled_by
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
1674 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
kidney
27
75
13
64
6
1
1
1
islet of Langerhans
61
68
1
6
4
7
3
1
1
4
liver
118
20
2
1
3
1
1
1
1
bone element
84
heart left ventricle
35
2
3
18
4
1
1
1
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