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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
8
snATAC-seq
1
ATAC-seq
Assay category
58
DNA binding
9
DNA accessibility
Target of assay
50
transcription factor
10
RNA binding protein
9
chromatin remodeller
6
control
histone
1
histone modification
1
narrow histone mark
Date released
26
December, 2018
17
January, 2019
15
November, 2018
8
January, 2021
1
January, 2018
Available data
58
bam
58
fastq
53
bigWig
52
bed narrowPeak
52
bigBed narrowPeak
Organism
67
Homo sapiens
Biosample type
59
cell line
8
primary cell
Organ
473
liver
387
pancreas
295
epithelium
264
kidney
224
heart
132
connective tissue
104
vasculature
99
blood vessel
97
bone element
82
brain
67
blood
67
bodily fluid
66
limb
65
artery
61
adipose tissue
57
musculature of body
39
eye
20
lung
19
spleen
18
ureter
14
nerve
12
skeleton
11
embryo
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
59
AMP
8
T1D
Genome assembly (visualization)
53
hg19
52
GRCh38
Lab
59
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
inconsistent control
assay_title!
total RNA-seq
audit.ERROR.category!
inconsistent control
month_released!
September, 2017
target.investigated_as!
histone
BIOSAMPLE
ASSAY
67 results
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ChIP-seq
snATAC-seq
ATAC-seq
cell line
GM12878
58
1
primary cell
peripheral blood mononuclear cell
8
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