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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
DNase-seq
2
HiChIP
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
75
DNA binding
3
DNA accessibility
2
Transcription
1
3D chromatin structure
Target of assay
52
transcription factor
13
control
10
RNA binding protein
10
chromatin remodeller
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
Date released
27
December, 2018
18
January, 2019
16
October, 2019
15
November, 2018
6
February, 2023
2
August, 2021
2
February, 2021
2
March, 2020
2
March, 2023
1
January, 2018
1
October, 2022
Available data
77
bam
65
bigWig
63
bed narrowPeak
62
bigBed narrowPeak
60
fastq
2
bed bed3+
2
tagAlign
2
tsv
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
1
txt
Organism
88
Homo sapiens
Biosample type
1394
tissue
783
primary cell
217
in vitro differentiated cells
92
cell line
9
stem cell
Organ
liver
61
blood
61
bodily fluid
16
pancreas
artery
14
blood vessel
14
heart
14
vasculature
3
kidney
2
epithelium
1
mammary gland
Project
85
AMP
5
T1D
2
community
Genome assembly (visualization)
65
hg19
64
GRCh38
Lab
83
AMP-T2D consortium
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
2
Bing Ren, UCSD
Audit category:
inconsistent ontology term
1
inconsistent control
Audit category:
1
inconsistent assembly
assay_title!
total RNA-seq
audit.ERROR.category!
inconsistent ontology term
organ_slims!
artery
liver
BIOSAMPLE
ASSAY
92 results
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Clear Filters
ChIP-seq
CRISPR genome editing followed by DNA sequencing
DNase-seq
HiChIP
STARR-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
MPRA
shRNA RNA-seq
siRNA RNA-seq
cell line
GM12878
60
1
Panc1
13
1
1
EndoC_BH1
3
2
1
EndoC-BH1
1
1
HEK293T
2
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