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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
27
snATAC-seq
18
single cell RNA-seq
14
ATAC-seq
6
WGBS
3
snDrop-seq
2
ChIP-seq
2
pCHi-C
Assay category
41
DNA accessibility
18
Transcription
6
DNA methylation
2
DNA binding
Target of assay
1
control
1
transcription factor
Date released
403
November, 2017
316
August, 2017
236
August, 2021
219
October, 2019
196
May, 2021
187
June, 2019
174
May, 2022
147
May, 2020
90
December, 2017
81
November, 2018
80
April, 2019
74
October, 2018
72
February, 2021
68
February, 2023
67
May, 2019
49
April, 2018
47
September, 2018
47
September, 2023
43
September, 2020
42
July, 2018
40
May, 2024
36
July, 2019
35
December, 2018
33
March, 2020
25
January, 2019
24
February, 2018
23
October, 2017
20
November, 2019
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
8
January, 2018
7
August, 2020
6
November, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
December, 2019
2
June, 2018
1
August, 2022
Available data
45
fastq
14
tsv
13
bam
11
bed narrowPeak
6
csv
5
txt
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
bigWig
2
tagAlign
Organism
72
Homo sapiens
Biosample type
47
primary cell
17
tissue
4
cell line
4
in vitro differentiated cells
Organ
14
artery
blood vessel
14
heart
14
vasculature
8
bone element
8
kidney
8
skeleton
6
connective tissue
6
epithelium
6
limb
6
pancreas
3
liver
Project
45
HPAP
27
AMP
Genome assembly (visualization)
17
hg19
11
GRCh38
Lab
45
Klaus Kaestner, Upenn
27
AMP-T2D consortium
Audit category:
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_title!
total RNA-seq
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bigBed bedMethyl
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
72 results
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snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
snDrop-seq
ChIP-seq
pCHi-C
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
tissue
kidney
5
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
+ See 8 more…
cell line
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
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