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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
DNase-seq
75
ATAC-seq
64
single cell RNA-seq
total RNA-seq
25
ChIP-seq
6
snATAC-seq
3
RRBS
3
snDrop-seq
2
RNA microarray
2
STARR-seq
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
159
DNA accessibility
65
Transcription
25
DNA binding
3
DNA methylation
1
3D chromatin structure
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
4
control
1
RNA binding protein
1
transcription factor
Date released
81
August, 2021
77
June, 2019
47
September, 2023
23
April, 2019
14
May, 2023
October, 2019
8
February, 2021
5
July, 2019
3
December, 2019
2
May, 2019
Available data
162
bed narrowPeak
104
bam
99
bigWig
98
bigBed narrowPeak
77
bed bed3+
77
bed broadPeak
77
bigBed broadPeak
64
xls
13
txt
11
tsv
5
csv
3
bed bedMethyl
3
bigBed bedMethyl
1
hic
Organism
260
Homo sapiens
Biosample type
245
tissue
13
primary cell
2
cell line
Organ
596
liver
483
pancreas
309
heart
305
epithelium
260
kidney
189
connective tissue
184
brain
127
vasculature
122
blood vessel
91
adipose tissue
81
musculature of body
69
blood
69
bodily fluid
59
artery
49
limb
35
eye
25
spleen
20
lung
19
embryo
18
ureter
13
bone element
12
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
vein
0
stomach
Project
213
AMP
47
KPMP
Genome assembly (visualization)
173
GRCh38
96
hg19
Lab
118
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
2
Bing Ren, UCSD
Audit category:
inconsistent ontology term
7
audit script error
assay_title!
total RNA-seq
audit.ERROR.category!
inconsistent ontology term
month_released!
October, 2019
BIOSAMPLE
ASSAY
260 results
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DNase-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
STARR-seq
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
13
75
64
23
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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primary cell
kidney epithelial cell
1
2
1
glomerular visceral epithelial cell
2
kidney tubule cell
2
renal cortical epithelial cell
1
1
glomerular endothelial cell
1
+ See 2 more…
cell line
HEK293T
2
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