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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
DNase-seq
17
ChIP-seq
8
ATAC-seq
total RNA-seq
4
Hi-C
1
WGBS
Assay category
43
DNA accessibility
17
DNA binding
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
31
June, 2019
22
October, 2019
6
February, 2021
5
July, 2019
1
May, 2019
Available data
61
bam
43
bed narrowPeak
38
bigWig
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
35
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
65
Homo sapiens
Biosample type
65
tissue
Organ
498
liver
362
pancreas
259
epithelium
246
kidney
220
heart
123
connective tissue
103
vasculature
99
blood vessel
82
brain
68
blood
68
bodily fluid
65
artery
65
limb
60
adipose tissue
55
musculature of body
39
eye
20
lung
19
spleen
18
ureter
14
nerve
13
bone element
12
skeleton
9
embryo
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
Project
65
AMP
Genome assembly (visualization)
44
GRCh38
43
hg19
Lab
65
AMP-T2D consortium
Audit category:
inconsistent ontology term
assay_title!
total RNA-seq
audit.ERROR.category!
inconsistent ontology term
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
65 results
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DNase-seq
ChIP-seq
ATAC-seq
Hi-C
WGBS
tissue
muscle of arm
17
muscle of leg
12
1
1
tibial nerve
2
11
1
tibial artery
2
5
1
gastrocnemius medialis
4
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