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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
total RNA-seq
46
ATAC-seq
6
single cell RNA-seq
3
Hi-C
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
99
DNA binding
47
DNA accessibility
6
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
50
May, 2019
43
October, 2019
35
February, 2023
14
February, 2021
6
August, 2021
4
July, 2019
3
March, 2020
3
November, 2017
Available data
129
bed narrowPeak
122
bam
92
bigWig
79
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
bed bed3+
7
tsv
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
158
Homo sapiens
Biosample type
121
tissue
23
primary cell
14
cell line
Organ
588
liver
520
pancreas
372
epithelium
291
heart
234
brain
216
kidney
183
connective tissue
162
vasculature
158
blood vessel
97
bone element
87
adipose tissue
81
artery
79
limb
69
blood
69
bodily fluid
56
musculature of body
38
eye
36
nerve
24
spleen
20
embryo
20
lung
20
vein
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
158
AMP
Genome assembly (visualization)
120
GRCh38
91
hg19
Lab
158
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
total RNA-seq
audit.ERROR.category!
inconsistent replicate
files.file_type!
bed bed3+
organ_slims!
esophagus
BIOSAMPLE
ASSAY
158 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery
5
36
tibial artery
23
1
aorta
13
4
1
2
1
thoracic aorta
16
1
ascending aorta
16
+ See 1 more…
primary cell
endothelial cell of umbilical vein
17
2
1
brain microvascular endothelial cell
3
cell line
smooth muscle cell of the coronary artery
6
8
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