Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
24
ChIP-seq
20
ATAC-seq
6
MeRIP-seq
2
Capture-C
1
DNase-seq
1
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
24
DNA binding
21
DNA accessibility
1
3D chromatin structure
1
DNA methylation
1
Transcription
Target of assay
15
histone
15
histone modification
9
control
9
narrow histone mark
6
broad histone mark
3
RNA binding protein
3
nucleotide modification
3
transcription factor
Date released
17
May, 2021
15
November, 2019
6
November, 2020
4
June, 2019
3
December, 2017
3
March, 2020
3
May, 2019
2
August, 2021
1
July, 2018
1
July, 2019
1
October, 2019
Available data
28
bam
22
bigWig
21
bed narrowPeak
5
bigBed narrowPeak
4
fastq
2
tsv
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
bigBed bedMethyl
1
bigBed broadPeak
1
hic
Organism
56
Homo sapiens
Biosample type
43
cell line
10
primary cell
3
in vitro differentiated cells
Organ
84
bone element
56
epithelium
48
pancreas
20
kidney
17
connective tissue
9
musculature of body
6
heart
3
embryo
2
brain
1
adipose tissue
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
54
AMP
2
T1D
Genome assembly (visualization)
26
hg19
22
GRCh38
Lab
50
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
56
inconsistent ontology term
5
audit script error
Audit category:
inconsistent control read length
assay_title!
total RNA-seq
audit.WARNING.category!
inconsistent control read length
organ_slims!
ovary
BIOSAMPLE
ASSAY
56 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
MeRIP-seq
Capture-C
DNase-seq
Hi-C
RRBS
single cell RNA-seq
cell line
EndoC_BH1
15
19
6
2
1
primary cell
epithelial cell of proximal tubule
3
1
1
kidney epithelial cell
3
Liver fetal (hepatocyte)
1
pancreatic acinar cell
1
in vitro differentiated cells
Hepatic endoderm
3
Download