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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
total RNA-seq
2
pCHi-C
1
DNase-seq
1
RRBS
Assay category
16
DNA binding
1
DNA accessibility
1
DNA methylation
Target of assay
9
transcription factor
7
recombinant protein
5
control
2
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
10
October, 2019
4
June, 2019
3
May, 2019
2
March, 2020
1
July, 2019
Available data
17
bam
12
bed narrowPeak
12
bigWig
5
bigBed narrowPeak
2
tsv
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
Organism
20
Homo sapiens
Biosample type
12
cell line
8
primary cell
Organ
84
bone element
57
epithelium
48
pancreas
20
kidney
16
connective tissue
9
musculature of body
6
heart
4
embryo
2
brain
1
adipose tissue
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
20
AMP
Genome assembly (visualization)
13
hg19
12
GRCh38
Lab
20
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
7
audit script error
assay_title!
total RNA-seq
biosample_type!
stem cell
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
20 results
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ChIP-seq
pCHi-C
DNase-seq
RRBS
cell line
RCC 7860 HIF1a re-expression
4
RCC 7860 vector
3
1
RCC 7860 HIF2a over-expression
3
RCC 7860 VHL
1
primary cell
epithelial cell of proximal tubule
3
1
1
kidney epithelial cell
3
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