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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
3
pCHi-C
total RNA-seq
1
ATAC-seq
1
DNase-seq
1
RRBS
Assay category
16
DNA binding
2
DNA accessibility
1
DNA methylation
Target of assay
9
transcription factor
7
recombinant protein
5
control
2
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
11
October, 2019
4
June, 2019
3
March, 2020
3
May, 2019
1
July, 2019
Available data
18
bam
13
bed narrowPeak
12
bigWig
5
bigBed narrowPeak
3
tsv
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
Organism
22
Homo sapiens
Biosample type
12
cell line
9
primary cell
1
tissue
Organ
84
bone element
57
epithelium
48
pancreas
20
kidney
17
connective tissue
9
musculature of body
6
heart
4
embryo
2
brain
1
adipose tissue
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
22
AMP
Genome assembly (visualization)
14
hg19
13
GRCh38
Lab
22
AMP-T2D consortium
Audit category:
27
inconsistent control
22
inconsistent ontology term
7
audit script error
1
inconsistent replicate
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
pCHi-C
ATAC-seq
DNase-seq
RRBS
cell line
RCC 7860 HIF1a re-expression
4
RCC 7860 vector
3
1
RCC 7860 HIF2a over-expression
3
RCC 7860 VHL
1
primary cell
epithelial cell of proximal tubule
3
1
1
kidney epithelial cell
3
Liver fetal (hepatocyte)
1
tissue
gastric (mucosa of stomach)
1
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