Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
268
ChIP-seq
total RNA-seq
13
ATAC-seq
9
WGBS
6
RRBS
5
DNase-seq
1
FAIRE-seq
Assay category
268
DNA binding
19
DNA accessibility
15
DNA methylation
Target of assay
191
histone modification
190
histone
111
broad histone mark
78
narrow histone mark
53
control
24
transcription factor
7
RNA binding protein
3
chromatin remodeller
Date released
396
November, 2017
284
October, 2019
283
August, 2017
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
93
December, 2017
85
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
April, 2018
49
March, 2020
48
July, 2018
47
September, 2023
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
19
April, 2020
19
October, 2017
16
January, 2021
15
September, 2018
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
172
fastq
166
bam
155
bigWig
150
bed narrowPeak
95
tagAlign
45
bigBed narrowPeak
43
bed broadPeak
19
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
295
Homo sapiens
Biosample type
192
tissue
63
in vitro differentiated cells
47
primary cell
Organ
109
connective tissue
82
pancreas
54
liver
46
adipose tissue
29
epithelium
26
musculature of body
12
brain
1
spleen
Project
302
AMP
Genome assembly (visualization)
158
hg19
132
GRCh38
Lab
301
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_title!
total RNA-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
302 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
WGBS
RRBS
DNase-seq
FAIRE-seq
tissue
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
islet of Langerhans
32
1
1
1
skeletal muscle tissue
22
4
pancreas
14
+ See 8 more…
in vitro differentiated cells
adipocyte
62
1
primary cell
skeletal muscle myoblast
15
1
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic acinar cell
1
See all biosamples
Download