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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
74
ChIP-seq
41
WGBS
34
single cell RNA-seq
total RNA-seq
22
snATAC-seq
Assay category
99
DNA accessibility
74
DNA binding
41
DNA methylation
34
Transcription
Target of assay
30
histone
30
histone modification
29
control
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
Date released
396
November, 2017
283
August, 2017
278
October, 2019
217
May, 2021
183
June, 2019
174
May, 2022
156
February, 2021
153
August, 2021
151
May, 2020
99
May, 2019
93
December, 2017
85
November, 2018
76
February, 2023
74
October, 2018
49
April, 2018
49
July, 2019
48
July, 2018
47
September, 2023
44
March, 2020
43
September, 2020
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
April, 2019
19
April, 2020
19
October, 2017
16
January, 2021
15
September, 2018
14
May, 2023
12
November, 2020
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
92
bam
83
bed narrowPeak
76
fastq
65
bigWig
45
bigBed narrowPeak
1
bed bed3+
1
txt
Organism
248
Homo sapiens
Biosample type
134
primary cell
114
tissue
Organ
149
pancreas
80
epithelium
23
adipose tissue
23
connective tissue
20
liver
2
musculature of body
Project
134
HPAP
114
AMP
Genome assembly (visualization)
84
hg19
45
GRCh38
Lab
134
Klaus Kaestner, Upenn
76
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
1
inconsistent control read length
assay_title!
total RNA-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
September, 2017
organ_slims!
heart
BIOSAMPLE
ASSAY
248 results
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Clear Filters
ATAC-seq
ChIP-seq
WGBS
single cell RNA-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
body of pancreas
33
liver
20
islet of Langerhans
18
endocrine pancreas
16
subcutaneous adipose tissue
12
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