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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
325
ChIP-seq
Assay category
325
DNA binding
Target of assay
325
transcription factor
80
recombinant protein
69
histone
69
histone modification
67
RNA binding protein
36
narrow histone mark
33
broad histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
Date released
226
November, 2017
51
November, 2018
25
December, 2018
14
January, 2019
4
June, 2019
2
August, 2017
2
December, 2017
1
May, 2019
Available data
378
bigWig
371
bam
369
bed narrowPeak
350
fastq
325
bigBed narrowPeak
47
bed broadPeak
47
bigBed broadPeak
9
tagAlign
3
tar
2
bed bed3+
Organism
325
Homo sapiens
Biosample type
313
cell line
tissue
10
primary cell
2
in vitro differentiated cells
Organ
264
liver
51
blood
51
bodily fluid
7
epithelium
3
brain
2
kidney
2
vasculature
1
blood vessel
1
connective tissue
1
eye
1
heart
Project
325
AMP
Genome assembly (visualization)
321
hg19
294
GRCh38
Lab
325
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
inconsistent control read length
8
inconsistent control run_type
assay_title!
total RNA-seq
audit.WARNING.category!
inconsistent control read length
biosample_type!
tissue
BIOSAMPLE
ASSAY
325 results
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ChIP-seq
cell line
HepG2
262
GM12878
51
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
cardiac fibroblast
1
cardiac muscle cell
1
+ See 4 more…
in vitro differentiated cells
hepatocyte
2
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