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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
716
ChIP-seq
177
DNase-seq
64
ATAC-seq
17
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
716
DNA binding
245
DNA accessibility
22
Transcription
17
DNA methylation
Target of assay
460
histone modification
459
histone
240
narrow histone mark
219
broad histone mark
167
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
178
October, 2019
163
June, 2019
115
May, 2019
79
April, 2019
76
August, 2017
73
October, 2018
69
November, 2017
50
May, 2020
48
December, 2017
33
July, 2019
26
November, 2018
20
November, 2019
18
May, 2022
15
October, 2017
8
February, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
March, 2020
1
March, 2019
Available data
1000
bam
915
bed narrowPeak
871
bigWig
555
bigBed narrowPeak
274
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
151
tsv
98
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
993
Homo sapiens
Biosample type
1000
tissue
454
primary cell
452
cell line
147
in vitro differentiated cells
1
stem cell
Organ
221
brain
155
pancreas
138
liver
120
heart
110
limb
97
kidney
83
blood vessel
83
vasculature
46
adipose tissue
46
connective tissue
41
musculature of body
38
nerve
34
artery
24
spleen
18
ureter
8
bone element
8
skeleton
3
eye
1
pituitary gland
Project
998
AMP
2
T1D
Genome assembly (visualization)
802
GRCh38
747
hg19
Lab
981
AMP-T2D consortium
18
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
audit.WARNING.category!
inconsistent control read length
month_released!
February, 2023
BIOSAMPLE
ASSAY
1000 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
liver
121
2
1
islet of Langerhans
30
1
38
6
1
body of pancreas
34
4
4
2
2
heart left ventricle
34
3
2
2
kidney
27
13
1
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