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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
268
ChIP-seq
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
16
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
288
DNA accessibility
268
DNA binding
189
Transcription
58
DNA methylation
10
3D chromatin structure
Target of assay
236
histone
236
histone modification
122
broad histone mark
114
narrow histone mark
35
control
10
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
150
May, 2021
134
May, 2022
100
May, 2020
56
August, 2017
51
June, 2019
48
July, 2018
47
February, 2021
47
September, 2018
43
April, 2018
43
September, 2020
32
October, 2019
18
July, 2019
12
February, 2023
8
January, 2021
7
August, 2020
6
November, 2017
5
September, 2017
4
August, 2021
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
November, 2020
1
March, 2020
1
March, 2023
1
November, 2018
Available data
450
bigWig
448
bam
284
bed narrowPeak
283
fastq
153
zippedFastqFolder
120
tsv
100
tagAlign
98
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
829
Homo sapiens
Biosample type
1556
tissue
829
primary cell
209
in vitro differentiated cells
188
cell line
10
stem cell
Organ
308
epithelium
265
pancreas
33
vasculature
28
blood vessel
28
connective tissue
28
kidney
22
vein
18
brain
13
musculature of body
9
liver
8
blood
8
bodily fluid
8
heart
4
eye
1
adipose tissue
bone element
1
bone marrow
Project
489
AMP
232
HPAP
107
T1D
1
ITG
Genome assembly (visualization)
465
hg19
376
GRCh38
Lab
456
AMP-T2D consortium
232
Klaus Kaestner, Upenn
140
Kyle Gaulton, UCSD
1
ITG
Audit category:
47
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
inconsistent control run_type
assay_title!
total RNA-seq
audit.WARNING.category!
inconsistent control run_type
organ_slims!
bone element
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
829 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
monocyte
85
15
1
1
pancreatic alpha cell
13
35
12
31
1
pancreatic beta cell
13
23
12
16
1
CD8-positive, alpha-beta T cell
33
2
1
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