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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
single cell RNA-seq
20
snATAC-seq
11
ATAC-seq
total RNA-seq
4
ChIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
pCHi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
58
Transcription
31
DNA accessibility
4
DNA binding
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
47
September, 2023
19
April, 2020
18
February, 2023
8
January, 2021
3
March, 2020
2
March, 2023
2
May, 2021
Available data
4
bam
4
bed narrowPeak
4
bigWig
Organism
96
Homo sapiens
Biosample type
primary cell
90
tissue
9
cell line
stem cell
Organ
47
kidney
25
pancreas
19
lung
2
epithelium
1
thymus
Project
AMP
47
KPMP
31
T1D
19
LungMap
2
community
Genome assembly (visualization)
4
GRCh38
4
hg19
Lab
47
KPMP
27
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
AMP-T2D consortium
2
Anna Gloyn, Oxford
Audit category:
2
inconsistent ontology term
assay_title!
total RNA-seq
award.project!
AMP
biosample_type!
primary cell
stem cell
month_released!
November, 2018
BIOSAMPLE
ASSAY
99 results
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single cell RNA-seq
snATAC-seq
ATAC-seq
ChIP-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
pCHi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney
47
islet of Langerhans
6
11
2
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
EndoC-BH1
1
1
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