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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
88
ChIP-seq
56
single cell RNA-seq
28
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
88
DNA binding
60
Transcription
39
DNA accessibility
1
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
102
May, 2021
47
September, 2023
19
April, 2020
18
February, 2023
16
January, 2021
5
March, 2023
3
March, 2020
Available data
88
bam
88
bed narrowPeak
88
bigWig
84
tagAlign
1
hic
Organism
205
Homo sapiens
Biosample type
109
primary cell
90
tissue
9
cell line
2
stem cell
Organ
47
kidney
25
pancreas
19
lung
8
blood
8
bodily fluid
2
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
139
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
89
GRCh38
88
hg19
Lab
Klaus Kaestner, Upenn
135
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
3
inconsistent ontology term
assay_title!
total RNA-seq
award.project!
AMP
files.file_type!
vcf
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
210 results
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Clear Filters
ChIP-seq
single cell RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
84
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
+ See 12 more…
tissue
kidney
47
islet of Langerhans
2
6
11
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
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