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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
Assay category
55
DNA binding
Target of assay
103
histone
103
histone modification
55
narrow histone mark
48
broad histone mark
35
control
12
transcription factor
8
RNA binding protein
3
nucleotide modification
1
chromatin remodeller
Date released
11
September, 2018
10
December, 2017
9
October, 2019
8
August, 2017
4
November, 2019
3
February, 2018
2
August, 2021
2
June, 2019
2
May, 2021
2
November, 2017
1
March, 2020
1
May, 2019
Available data
55
bam
53
bed narrowPeak
53
bigWig
34
fastq
15
bigBed narrowPeak
3
bed bed3+
3
tagAlign
2
bed broadPeak
2
bigBed broadPeak
Organism
55
Homo sapiens
Biosample type
35
primary cell
14
in vitro differentiated cells
6
cell line
Organ
117
brain
73
pancreas
60
liver
49
epithelium
40
heart
33
connective tissue
26
vasculature
25
blood vessel
15
kidney
15
limb
13
musculature of body
12
adipose tissue
8
embryo
8
nerve
6
artery
6
vein
4
gonad
4
ovary
3
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
53
AMP
2
T1D
Genome assembly (visualization)
53
GRCh38
53
hg19
Lab
55
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
assay_title!
total RNA-seq
award.project!
HPAP
BIOSAMPLE
ASSAY
55 results
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Clear Filters
ChIP-seq
primary cell
pancreatic ductal cell
7
endothelial cell of umbilical vein
6
epithelial cell of proximal tubule
4
pancreatic acinar cell
4
pancreatic alpha cell
4
+ See 6 more…
in vitro differentiated cells
pancreatic endoderm
6
hepatocyte
5
Hepatic endoderm
2
pancreatic PP cell
1
cell line
EndoC_BH1
6
See all biosamples
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