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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
369
ChIP-seq
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
369
DNA binding
2
3D chromatin structure
1
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
297
transcription factor
82
recombinant protein
60
control
54
RNA binding protein
20
chromatin remodeller
18
histone
18
histone modification
broad histone mark
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
307
November, 2017
46
November, 2018
21
August, 2021
2
February, 2021
1
December, 2018
1
May, 2020
Available data
354
fastq
353
bam
318
bigWig
300
bed narrowPeak
286
bigBed narrowPeak
50
bed broadPeak
50
bigBed broadPeak
6
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
tsv
1
vcf
Organism
378
Homo sapiens
Biosample type
378
cell line
166
tissue
8
in vitro differentiated cells
8
primary cell
Organ
378
liver
61
blood
61
bodily fluid
49
pancreas
39
epithelium
15
kidney
14
artery
14
blood vessel
14
heart
14
vasculature
1
mammary gland
Project
378
AMP
Genome assembly (visualization)
316
hg19
256
GRCh38
Lab
357
AMP-T2D consortium
21
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
20
inconsistent control read length
8
inconsistent control run_type
assay_title!
total RNA-seq
award.project!
LungMap
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
378 results
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ChIP-seq
Hi-C
STARR-seq
pCHi-C
ATAC-seq
WGBS
whole genome sequencing assay
cell line
HepG2
369
2
2
2
1
1
1
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