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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
4
ATAC-seq
4
WGBS
total RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
36
DNA binding
4
DNA accessibility
4
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
40
August, 2017
2
October, 2019
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
Available data
bam
44
fastq
31
bigWig
14
bed narrowPeak
10
bigBed narrowPeak
9
tagAlign
6
bed bed3+
4
tsv
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
46
Homo sapiens
Biosample type
46
tissue
1
in vitro differentiated cells
Organ
190
pancreas
179
heart
161
kidney
152
epithelium
89
bone element
84
connective tissue
80
liver
48
vasculature
47
blood vessel
46
adipose tissue
37
artery
37
musculature of body
35
eye
31
brain
9
blood
9
bodily fluid
5
gonad
5
limb
5
ovary
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
47
AMP
Genome assembly (visualization)
4
hg19
Lab
47
AMP-T2D consortium
assay_title!
total RNA-seq
award.project!
LungMap
files.file_type!
bam
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
ATAC-seq
WGBS
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
adipose tissue
3
1
1
islet of Langerhans
1
subcutaneous adipose tissue
1
in vitro differentiated cells
white fat cell
1
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