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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
106
single cell RNA-seq
76
ATAC-seq
total RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
117
DNA binding
106
Transcription
82
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
50
histone
50
histone modification
41
control
28
broad histone mark
26
transcription factor
22
narrow histone mark
12
RNA binding protein
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
April, 2018
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
151
bed narrowPeak
108
bam
98
tsv
77
bigWig
64
xls
58
fastq
45
bigBed narrowPeak
24
tagAlign
8
txt
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
318
Homo sapiens
Biosample type
253
tissue
35
in vitro differentiated cells
27
cell line
4
primary cell
Organ
92
heart
81
kidney
54
pancreas
28
connective tissue
26
liver
24
adipose tissue
6
blood vessel
6
epithelium
6
vasculature
2
artery
Project
319
AMP
Genome assembly (visualization)
135
GRCh38
90
hg19
Lab
210
AMP-T2D consortium
79
Katalin Susztak, Upenn
26
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
Audit category:
1
inconsistent control read length
assay_title!
total RNA-seq
award.project!
LungMap
BIOSAMPLE
ASSAY
319 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
6
1
body of pancreas
33
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
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in vitro differentiated cells
neural progenitor cell
21
10
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
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