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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
183
ChIP-seq
149
ATAC-seq
98
single cell RNA-seq
total RNA-seq
25
DNase-seq
9
RRBS
5
Hi-C
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
183
DNA binding
175
DNA accessibility
99
Transcription
10
DNA methylation
5
3D chromatin structure
Target of assay
145
histone
145
histone modification
74
broad histone mark
71
narrow histone mark
32
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
100
May, 2020
59
August, 2017
51
May, 2021
47
September, 2018
46
July, 2018
41
April, 2018
38
June, 2019
32
October, 2019
15
July, 2019
12
February, 2023
9
November, 2017
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
1
March, 2020
1
November, 2018
Available data
349
bam
345
bigWig
209
fastq
194
bed narrowPeak
109
tsv
94
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
27
bed bed3+
16
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
3
hdf5
2
csv
2
hic
1
bedpe bed3+
1
tar
Organism
472
Homo sapiens
Biosample type
1542
tissue
540
cell line
472
primary cell
170
in vitro differentiated cells
7
stem cell
Organ
214
epithelium
166
pancreas
35
vasculature
30
kidney
29
blood vessel
connective tissue
22
vein
21
brain
13
musculature of body
9
heart
9
liver
5
eye
1
adipose tissue
Project
472
AMP
232
HPAP
107
T1D
1
ITG
Genome assembly (visualization)
365
hg19
269
GRCh38
Lab
439
AMP-T2D consortium
33
Kyle Gaulton, UCSD
Audit category:
36
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
total RNA-seq
month_released!
October, 2017
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
472 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RRBS
Hi-C
DNAme array
FAIRE-seq
small RNA-seq
primary cell
CD8-positive, alpha-beta T cell
33
2
pancreatic beta cell
13
7
12
pancreatic alpha cell
13
6
12
pancreatic ductal cell
13
4
10
pancreatic acinar cell
8
5
12
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