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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
total RNA-seq
47
ATAC-seq
37
ChIP-seq
30
DNase-seq
8
WGBS
3
pCHi-C
2
Hi-C
2
RRBS
1
small RNA-seq
Assay category
94
Transcription
77
DNA accessibility
37
DNA binding
10
DNA methylation
2
3D chromatin structure
Target of assay
92
histone
histone modification
54
broad histone mark
38
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
92
August, 2021
36
February, 2023
33
June, 2019
15
April, 2019
15
July, 2019
14
February, 2021
8
May, 2019
5
March, 2020
5
May, 2024
October, 2019
Available data
96
tsv
94
bed narrowPeak
81
bam
58
bigWig
38
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
2
bedpe bed3+
2
hic
Organism
223
Homo sapiens
Biosample type
202
tissue
14
cell line
7
primary cell
Organ
498
liver
267
pancreas
223
heart
201
kidney
190
epithelium
128
connective tissue
96
bone element
90
vasculature
85
blood vessel
74
brain
60
adipose tissue
60
blood
60
bodily fluid
57
artery
57
musculature of body
44
limb
34
eye
19
spleen
18
ureter
12
skeleton
11
embryo
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
223
AMP
Genome assembly (visualization)
101
GRCh38
56
hg19
Lab
218
AMP-T2D consortium
5
Patrick T. Ellinor, Broad
Audit category:
4
inconsistent ontology term
assay_title!
total RNA-seq
month_released!
October, 2019
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
223 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
tissue
coronary artery
36
3
2
heart left ventricle
18
2
11
3
4
1
1
1
heart right ventricle
17
2
1
2
1
1
left cardiac atrium
18
5
1
heart
1
2
18
1
1
+ See 9 more…
cell line
smooth muscle cell of the coronary artery
8
6
primary cell
cardiac fibroblast
3
3
1
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