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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • total RNA-seq
  • 152single cell RNA-seq
  • 142ATAC-seq
  • 106ChIP-seq
  • 82snATAC-seq
  • 47WGBS
  • 17pCHi-C
  • 8Hi-C
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 224DNA accessibility
  • 156Transcription
  • 106DNA binding
  • 47DNA methylation
  • 83D chromatin structure
  • 1DNA sequencing
Target of assay
  • 91histone
  • 91histone modification
  • 46narrow histone mark
  • 45broad histone mark
  • 11transcription factor
  • 4control
  • 1RNA binding protein
Date released
  • 134May, 2022
  • 109August, 2021
  • 102May, 2021
  • 47September, 2023
  • 45February, 2021
  • 43September, 2020
  • 21February, 2023
  • 19April, 2020
  • 16January, 2021
  • 14May, 2023
  • 7August, 2020
  • 5March, 2023
  • 3March, 2020
  • 3October, 2022
  • 2March, 2019
  • 1October, 2017
Available data
  • 170bed narrowPeak
  • 153zippedFastqFolder
  • 118bigWig
  • 88bam
  • 84tagAlign
  • 78fastq
  • 64xls
  • 11txt
  • 7hic
  • 6tsv
  • 5bedpe bed3+
  • 3bed bedgraph
  • 3cool
  • 2bed bed3+
  • 1bed broadPeak
  • 1bedpe
  • 1vcf
Organism
  • 566Homo sapiens
Biosample type
  • 341primary cell
  • 187tissue
  • 34cell line
  • 7in vitro differentiated cells
  • 2stem cell
Organ
  • 142kidney
  • 128pancreas
  • 101epithelium
  • 22liver
  • 19lung
  • 8blood
  • 8bodily fluid
  • 5connective tissue
  • 1bone element
  • 1bone marrow
  • 1thymus
Project
  • 232HPAP
  • 139T1D
  • 129AMP
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 176GRCh38
  • 117hg19
Lab
  • 232Klaus Kaestner, Upenn
  • 135Kyle Gaulton, UCSD
  • 93Katalin Susztak, Upenn
  • 47KPMP
  • 28Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 4AMP-T2D consortium
  • 4Anna Gloyn, Oxford
  • 1ITG
  • 1Stephen Parker, UMich
Audit category:
  • 30audit script error
  • 5inconsistent ontology term
assay_title!
  • total RNA-seq
award.rfa!
  • AMP
BIOSAMPLE
ASSAY

571 results

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Clear Filters
single cell RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
Langerhans cell8548
monocyte841
pancreatic alpha cell29311
pancreatic beta cell16161
peripheral blood mononuclear cell8
tissue
kidney587561
islet of Langerhans13262
lung910
pancreas4
thymus1
cell line
HepG218121
EndoC_BH1232
EndoC-BH111
HEK293T2
Synthesized DNA1
in vitro differentiated cells
adipocyte11
osteoblast11
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
stem cell
SB Ad3.111
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