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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1765ChIP-seq
  • total RNA-seq
  • 389ATAC-seq
  • 217single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 40pCHi-C
  • 28WGBS
  • 26Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2snATAC-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
Assay category
  • 1765DNA binding
  • 608DNA accessibility
  • 235Transcription
  • 50DNA methylation
  • 263D chromatin structure
Target of assay
  • 926histone modification
  • 925histone
  • 503transcription factor
  • 468narrow histone mark
  • 456broad histone mark
  • 339control
  • 113RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 322August, 2017
  • 284October, 2019
  • 218June, 2019
  • 151May, 2020
  • 136August, 2021
  • 125February, 2021
  • 120May, 2019
  • 115May, 2021
  • 94December, 2017
  • 91February, 2023
  • 88November, 2018
  • 80April, 2019
  • 74October, 2018
  • 64July, 2019
  • 49April, 2018
  • 48July, 2018
  • 47September, 2018
  • 46March, 2020
  • 41November, 2019
  • 40May, 2022
  • 40May, 2024
  • 35December, 2018
  • 25January, 2019
  • 24February, 2018
  • 22October, 2017
  • 12November, 2020
  • 11September, 2017
  • 8January, 2018
  • 5December, 2019
  • 4August, 2018
  • 3June, 2018
  • 3March, 2019
  • 1August, 2022
  • 1October, 2022
Available data
  • 2022bam
  • 1773bigWig
  • 1647bed narrowPeak
  • 1043fastq
  • 1042bigBed narrowPeak
  • 321bed broadPeak
  • 314tagAlign
  • 285bigBed broadPeak
  • 279tsv
  • 269bed bed3+
  • 91txt
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 18bedpe bed3+
  • 16hic
  • 12bed bed3
  • 8csv
  • 5hdf5
  • 4bed bedgraph
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
Organism
  • 2823Homo sapiens
Biosample type
  • 1559tissue
  • 515cell line
  • 500primary cell
  • 251in vitro differentiated cells
  • 8stem cell
Organ
  • 580liver
  • 421pancreas
  • 321heart
  • 292epithelium
  • 269brain
  • 205connective tissue
  • 175vasculature
  • 169blood vessel
  • 152kidney
  • 115limb
  • 96bone element
  • 93adipose tissue
  • 90musculature of body
  • 85artery
  • 61blood
  • 61bodily fluid
  • 42eye
  • 38nerve
  • 25spleen
  • 23embryo
  • 22vein
  • 18ureter
  • 12skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 2833AMP
Genome assembly (visualization)
  • 1817hg19
  • 1674GRCh38
  • 5hg18
Lab
  • 2667AMP-T2D consortium
  • 93Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
Audit category:
  • 218inconsistent ontology term
  • 28inconsistent control
  • 12audit script error
  • 1inconsistent replicate
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
assay_title!
  • total RNA-seq
BIOSAMPLE
ASSAY

2833 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
Hi-C
RRBS
small RNA-seq
MeRIP-seq
FAIRE-seq
GRO-seq
snDrop-seq
Capture-C
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
tissue
liver145201213111
islet of Langerhans695561411411
bone element84
heart left ventricle3521831411
left cardiac atrium40181
cell line
HepG23601211
GM12878601
EndoC_BH113191621
Panc11311
smooth muscle cell of the coronary artery68
primary cell
CD8-positive, alpha-beta T cell332
pancreatic beta cell13712
pancreatic alpha cell13612
pancreatic ductal cell13410
pancreatic acinar cell8512
in vitro differentiated cells
adipocyte6771
embryonic stem cell4051
neural progenitor cell2110
pancreatic endoderm181
hepatocyte15
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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