Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
71
ChIP-seq
68
ATAC-seq
7
snATAC-seq
6
single cell RNA-seq
4
MeRIP-seq
4
pCHi-C
3
Hi-C
1
DNase-seq
1
FAIRE-seq
1
RRBS
Assay category
77
DNA accessibility
71
DNA binding
6
Transcription
3
3D chromatin structure
1
DNA methylation
Target of assay
51
histone
51
histone modification
37
narrow histone mark
15
control
14
broad histone mark
7
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
44
August, 2017
38
October, 2019
20
November, 2019
18
May, 2022
13
February, 2023
6
April, 2018
6
September, 2017
5
March, 2019
4
January, 2021
4
March, 2020
4
November, 2020
1
August, 2021
1
August, 2022
1
July, 2019
1
October, 2017
Available data
76
bam
59
bed narrowPeak
56
fastq
40
bigWig
21
bed bed3+
9
tagAlign
8
bed broadPeak
7
tsv
2
bedpe bed3+
2
bigBed narrowPeak
2
hic
1
bed bedMethyl
1
bedpe
1
bigBed bedMethyl
Organism
166
Homo sapiens
Biosample type
166
tissue
Organ
131
pancreas
7
eye
4
gonad
4
ovary
1
brain
1
connective tissue
1
limb
1
lymph node
1
pituitary gland
1
skin of body
Project
147
AMP
19
T1D
Genome assembly (visualization)
84
hg19
54
GRCh38
Lab
120
AMP-T2D consortium
35
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
assay_title!
total RNA-seq
month_released!
January, 2019
BIOSAMPLE
ASSAY
166 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
MeRIP-seq
pCHi-C
Hi-C
DNase-seq
FAIRE-seq
RRBS
tissue
islet of Langerhans
71
68
7
6
4
4
3
1
1
1
Download