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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
6
Hi-C
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
18
DNA binding
6
3D chromatin structure
6
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
20
histone
20
histone modification
12
broad histone mark
narrow histone mark
6
control
Date released
11
August, 2017
8
July, 2019
6
June, 2019
5
May, 2019
3
March, 2020
2
May, 2022
1
January, 2018
Available data
53
bigWig
49
bed narrowPeak
47
bam
bed broadPeak
41
bigBed narrowPeak
34
bed bed3+
33
bigBed broadPeak
10
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
tsv
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
36
Homo sapiens
Biosample type
28
tissue
8
primary cell
Organ
410
pancreas
285
epithelium
237
heart
186
kidney
168
connective tissue
159
liver
120
vasculature
118
blood vessel
113
brain
97
bone element
79
adipose tissue
64
limb
61
artery
36
musculature of body
35
eye
28
nerve
22
spleen
20
lung
15
embryo
12
skeleton
12
vein
8
blood
8
bodily fluid
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
36
AMP
Genome assembly (visualization)
17
hg19
11
GRCh38
Lab
36
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
1
audit script error
assay_title!
total RNA-seq
biosample_type!
cell line
files.file_type!
bed broadPeak
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
7
4
1
1
1
1
muscle of leg
5
1
gastrocnemius medialis
4
psoas muscle
2
1
primary cell
skeletal muscle satellite cell
5
1
skeletal muscle cell
1
1
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