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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
DNase-seq
74
ChIP-seq
27
ATAC-seq
5
FAIRE-seq
Assay category
239
DNA accessibility
74
DNA binding
Target of assay
histone
311
histone modification
194
broad histone mark
117
narrow histone mark
74
transcription factor
29
RNA binding protein
4
chromatin remodeller
3
other context
3
other post-translational modification
Date released
191
June, 2019
33
December, 2017
17
November, 2018
15
October, 2018
14
September, 2018
12
August, 2017
10
October, 2019
5
April, 2019
5
May, 2019
5
September, 2017
3
December, 2018
November, 2017
2
July, 2019
1
November, 2020
Available data
865
bam
636
bigWig
595
bed narrowPeak
480
fastq
313
bigBed narrowPeak
279
tsv
243
bed bed3+
209
bed broadPeak
207
bigBed broadPeak
153
zippedFastqFolder
101
txt
64
xls
58
tagAlign
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tar
Organism
313
Homo sapiens
Biosample type
249
tissue
cell line
59
primary cell
5
in vitro differentiated cells
Organ
81
kidney
44
epithelium
43
liver
41
pancreas
38
heart
36
limb
33
brain
33
musculature of body
19
connective tissue
18
ureter
15
vasculature
13
blood vessel
9
adipose tissue
7
spleen
5
artery
5
eye
3
vein
2
nerve
Project
313
AMP
Genome assembly (visualization)
302
GRCh38
290
hg19
Lab
313
AMP-T2D consortium
Audit category:
27
inconsistent control
7
inconsistent ontology term
assay_title!
total RNA-seq
biosample_type!
cell line
month_released!
November, 2017
target.investigated_as!
histone
BIOSAMPLE
ASSAY
313 results
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DNase-seq
ChIP-seq
ATAC-seq
FAIRE-seq
tissue
liver
2
33
heart
18
muscle of arm
17
brain
14
kidney
13
1
+ See 43 more…
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
cardiac fibroblast
3
1
pancreatic ductal cell
4
+ See 22 more…
in vitro differentiated cells
adipocyte
1
2
hepatocyte
2
See all biosamples
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