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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
ChIP-seq
9
DNase-seq
6
WGBS
total RNA-seq
4
single cell RNA-seq
2
RNA microarray
1
FAIRE-seq
Assay category
10
DNA accessibility
10
DNA binding
6
DNA methylation
4
Transcription
Target of assay
7
transcription factor
3
control
3
other context
3
other post-translational modification
Date released
322
August, 2017
258
October, 2019
218
August, 2021
218
June, 2019
200
May, 2021
174
May, 2022
152
February, 2021
150
May, 2020
120
May, 2019
106
February, 2023
94
December, 2017
91
November, 2017
80
April, 2019
74
October, 2018
64
July, 2019
49
April, 2018
48
July, 2018
47
September, 2018
47
September, 2023
43
September, 2020
42
March, 2020
40
May, 2024
27
November, 2018
26
November, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
6
November, 2020
5
December, 2019
4
August, 2018
3
June, 2018
3
March, 2019
3
March, 2023
3
October, 2022
1
August, 2022
Available data
27
fastq
26
bam
23
bigWig
17
bed narrowPeak
17
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
4
tsv
1
csv
Organism
32
Homo sapiens
Biosample type
cell line
29
tissue
2
in vitro differentiated cells
1
primary cell
Organ
9
spleen
7
liver
7
pancreas
3
kidney
2
brain
1
adipose tissue
1
connective tissue
1
epithelium
Project
32
AMP
Genome assembly (visualization)
22
GRCh38
17
hg19
Lab
32
AMP-T2D consortium
Audit category:
4
audit script error
2
inconsistent ontology term
assay_title!
total RNA-seq
biosample_type!
cell line
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
DNase-seq
WGBS
single cell RNA-seq
RNA microarray
FAIRE-seq
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 5 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
primary cell
pancreatic cell
1
See all biosamples
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