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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
70
ChIP-seq
total RNA-seq
43
ATAC-seq
7
DNase-seq
6
single cell RNA-seq
5
Hi-C
2
WGBS
2
pCHi-C
1
FAIRE-seq
Assay category
70
DNA binding
51
DNA accessibility
6
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
52
histone
52
histone modification
31
broad histone mark
21
narrow histone mark
14
control
4
RNA binding protein
4
transcription factor
Date released
86
February, 2021
50
May, 2019
39
February, 2023
21
October, 2019
6
August, 2021
6
July, 2019
5
June, 2019
3
March, 2020
3
November, 2017
1
May, 2021
Available data
98
bed narrowPeak
84
bam
84
txt
67
bigWig
59
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
9
bed bed3+
7
tsv
4
bed bed3
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
220
Homo sapiens
Biosample type
190
tissue
30
primary cell
cell line
Organ
490
pancreas
348
epithelium
307
heart
279
kidney
269
brain
215
liver
210
connective tissue
161
vasculature
155
blood vessel
limb
97
bone element
93
adipose tissue
90
musculature of body
71
artery
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
219
AMP
1
T1D
Genome assembly (visualization)
98
GRCh38
74
hg19
Lab
219
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
audit script error
assay_title!
total RNA-seq
biosample_type!
cell line
organ_slims!
limb
BIOSAMPLE
ASSAY
220 results
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RNA microarray
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
pCHi-C
FAIRE-seq
tissue
bone element
84
coronary artery
5
36
2
aorta
13
4
1
2
1
ascending aorta
16
1
thoracic aorta
16
1
+ See 7 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
megakaryocyte
1
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