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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
total RNA-seq
46
ATAC-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
79
DNA binding
51
DNA accessibility
6
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
50
May, 2019
35
February, 2023
26
October, 2019
14
February, 2021
6
August, 2021
4
July, 2019
3
June, 2019
2
March, 2020
Available data
112
bed narrowPeak
97
bam
70
bigWig
62
bigBed narrowPeak
7
tsv
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
140
Homo sapiens
Biosample type
126
tissue
primary cell
14
cell line
Organ
593
liver
312
heart
283
pancreas
264
kidney
248
brain
181
connective tissue
140
blood vessel
140
vasculature
115
limb
96
bone element
92
adipose tissue
85
artery
80
epithelium
77
musculature of body
61
blood
61
bodily fluid
38
nerve
37
eye
25
spleen
23
embryo
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
140
AMP
Genome assembly (visualization)
113
GRCh38
78
hg19
Lab
140
AMP-T2D consortium
assay_title!
total RNA-seq
biosample_type!
primary cell
files.file_type!
bedpe
BIOSAMPLE
ASSAY
140 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
5
36
2
tibial artery
23
1
2
aorta
13
4
2
1
1
ascending aorta
16
1
thoracic aorta
16
1
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cell line
smooth muscle cell of the coronary artery
6
8
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