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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
506
ChIP-seq
total RNA-seq
3
DNase-seq
3
small RNA-seq
2
ATAC-seq
1
WGBS
Assay category
506
DNA binding
5
DNA accessibility
3
Transcription
1
DNA methylation
Target of assay
326
transcription factor
100
control
82
recombinant protein
77
histone modification
76
histone
57
RNA binding protein
48
narrow histone mark
28
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
314
November, 2017
63
December, 2017
53
November, 2018
50
May, 2020
26
August, 2017
5
October, 2019
3
July, 2019
1
February, 2021
Available data
515
bam
460
fastq
457
bigWig
435
bed narrowPeak
356
bigBed narrowPeak
82
tagAlign
61
bed broadPeak
61
bigBed broadPeak
7
bed bed3+
5
tsv
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
515
Homo sapiens
Biosample type
361
cell line
139
tissue
15
in vitro differentiated cells
primary cell
Organ
515
liver
222
brain
193
pancreas
134
heart
110
limb
108
kidney
105
connective tissue
97
blood vessel
97
vasculature
60
blood
60
bodily fluid
48
artery
46
adipose tissue
41
musculature of body
39
epithelium
38
nerve
24
spleen
22
embryo
18
ureter
12
bone element
12
skeleton
3
eye
1
pituitary gland
Project
515
AMP
Genome assembly (visualization)
420
hg19
366
GRCh38
Lab
515
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
total RNA-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
515 results
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ChIP-seq
DNase-seq
small RNA-seq
ATAC-seq
WGBS
cell line
HepG2
359
1
1
tissue
liver
122
2
1
right lobe of liver
10
1
2
1
in vitro differentiated cells
hepatocyte
15
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