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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
DNase-seq
58
ChIP-seq
Assay category
177
DNA accessibility
58
DNA binding
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
163
June, 2019
58
November, 2017
9
November, 2018
5
October, 2019
August, 2017
Available data
1508
bam
1405
bed narrowPeak
1293
bigWig
910
bigBed narrowPeak
692
fastq
246
bed broadPeak
235
bigBed broadPeak
225
tagAlign
203
bed bed3+
165
tsv
64
xls
21
bed bedMethyl
21
bigBed bedMethyl
19
bedpe bed3+
18
txt
17
hic
7
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
235
Homo sapiens
Biosample type
176
tissue
59
cell line
primary cell
Organ
68
kidney
61
liver
36
limb
32
musculature of body
27
brain
27
heart
18
ureter
7
pancreas
5
blood vessel
5
vasculature
4
artery
3
eye
2
adipose tissue
2
connective tissue
2
nerve
1
spleen
Project
235
AMP
Genome assembly (visualization)
221
GRCh38
219
hg19
Lab
235
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
13
inconsistent control read length
assay_title!
total RNA-seq
biosample_type!
primary cell
month_released!
August, 2017
organ_slims!
bone element
BIOSAMPLE
ASSAY
235 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
58
Panc1
1
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