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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
34
ATAC-seq
20
snATAC-seq
total RNA-seq
9
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
pCHi-C
Assay category
54
DNA accessibility
37
DNA binding
9
Transcription
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
5
RNA binding protein
5
control
Date released
43
May, 2021
19
April, 2020
18
February, 2023
18
May, 2022
8
January, 2021
Available data
18
bam
18
bed narrowPeak
18
fastq
5
bigWig
Organism
105
Homo sapiens
Biosample type
primary cell
59
tissue
42
in vitro differentiated cells
5
cell line
Organ
39
pancreas
19
lung
1
thymus
Project
60
AMP
27
T1D
19
LungMap
Genome assembly (visualization)
23
hg19
Lab
2204
AMP-T2D consortium
93
Katalin Susztak, Upenn
87
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
assay_title!
total RNA-seq
biosample_type!
primary cell
lab.title!
Anna Gloyn, Oxford
BIOSAMPLE
ASSAY
106 results
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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
pCHi-C
tissue
islet of Langerhans
29
6
lung
10
9
pancreas
4
thymus
1
in vitro differentiated cells
embryonic stem cell
37
5
cell line
EndoC_BH1
3
2
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