Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
84
RNA microarray
52
ChIP-seq
13
ATAC-seq
6
single cell RNA-seq
3
snDrop-seq
2
pCHi-C
Assay category
52
DNA binding
13
DNA accessibility
6
Transcription
Target of assay
27
histone
27
histone modification
27
narrow histone mark
24
control
1
transcription factor
Date released
397
November, 2017
263
August, 2017
235
August, 2021
226
October, 2019
160
June, 2019
109
February, 2021
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
66
May, 2021
65
February, 2023
65
May, 2019
51
May, 2020
47
September, 2023
46
March, 2020
42
July, 2019
41
November, 2019
40
May, 2022
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
14
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
89
txt
61
bam
52
tagAlign
37
bed narrowPeak
28
bigWig
9
tsv
6
csv
4
bed bedgraph
1
bed bed3
1
bed bed3+
Organism
160
Homo sapiens
Biosample type
151
tissue
primary cell
5
cell line
4
in vitro differentiated cells
Organ
92
bone element
54
liver
14
artery
blood vessel
14
heart
14
vasculature
8
kidney
8
skeleton
6
limb
4
connective tissue
Project
160
AMP
Genome assembly (visualization)
42
hg19
29
GRCh38
Lab
160
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
5
audit script error
1
inconsistent replicate
assay_title!
total RNA-seq
biosample_type!
primary cell
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
160 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
ChIP-seq
ATAC-seq
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
bone element
84
liver
50
1
kidney
5
distal epiphysis
1
distal epiphysis of femur
1
+ See 9 more…
cell line
HepG2
1
2
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
See all biosamples
Download