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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
84
RNA microarray
21
ATAC-seq
8
ChIP-seq
6
single cell RNA-seq
3
snDrop-seq
1
pCHi-C
Assay category
21
DNA accessibility
8
DNA binding
6
Transcription
Target of assay
5
transcription factor
3
control
Date released
362
November, 2017
232
August, 2021
197
August, 2017
163
June, 2019
123
February, 2021
120
October, 2019
100
February, 2023
87
November, 2018
82
May, 2019
78
December, 2017
63
October, 2018
57
April, 2019
54
May, 2021
47
September, 2023
46
July, 2019
45
March, 2020
40
May, 2022
37
November, 2019
35
December, 2018
25
May, 2024
24
May, 2020
22
January, 2019
21
October, 2017
19
April, 2020
16
February, 2018
14
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
89
txt
25
bam
22
bed narrowPeak
8
tagAlign
8
tsv
6
csv
5
bigWig
4
bed bedgraph
1
bed bed3
1
bed bed3+
Organism
123
Homo sapiens
Biosample type
101
tissue
primary cell
18
cell line
4
in vitro differentiated cells
Organ
92
bone element
14
artery
14
blood vessel
14
heart
14
vasculature
8
kidney
8
skeleton
6
limb
4
connective tissue
3
liver
Project
123
AMP
Genome assembly (visualization)
27
hg19
22
GRCh38
Lab
123
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
5
audit script error
1
inconsistent replicate
assay_title!
total RNA-seq
biosample_type!
primary cell
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
123 results
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Clear Filters
RNA microarray
ATAC-seq
ChIP-seq
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
bone element
84
kidney
5
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 9 more…
cell line
smooth muscle cell of the coronary artery
8
6
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
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