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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
46
ChIP-seq
17
ATAC-seq
2
Capture-C
1
DNase-seq
1
pCHi-C
Assay category
46
DNA binding
18
DNA accessibility
Target of assay
38
histone
38
histone modification
transcription factor
20
broad histone mark
17
narrow histone mark
8
control
4
RNA binding protein
2
chromatin remodeller
Date released
46
August, 2017
9
February, 2023
4
August, 2021
4
February, 2021
3
October, 2019
1
March, 2020
Available data
32
bam
32
fastq
30
bigWig
28
bed narrowPeak
14
tagAlign
7
bed bed3+
5
bed bed3
4
bed bedgraph
3
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
67
Homo sapiens
Biosample type
65
in vitro differentiated cells
primary cell
1
stem cell
1
tissue
Organ
296
heart
265
pancreas
256
kidney
255
liver
248
brain
142
connective tissue
133
blood vessel
133
vasculature
115
limb
96
bone element
80
artery
77
musculature of body
76
epithelium
adipose tissue
38
nerve
37
eye
20
embryo
20
lung
19
spleen
18
ureter
12
skeleton
10
blood
10
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
67
AMP
Genome assembly (visualization)
46
hg19
27
GRCh38
Lab
63
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_title!
total RNA-seq
biosample_type!
primary cell
organ_slims!
adipose tissue
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
67 results
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ChIP-seq
ATAC-seq
Capture-C
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
45
8
1
1
chondrocyte
5
immature adipocyte
2
osteoblast
1
1
preadipocyte
1
stem cell
mesenchymal stem cell
1
tissue
islet of Langerhans
1
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