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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
31
ATAC-seq
21
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
1
RNA microarray
Assay category
32
DNA accessibility
21
DNA binding
1
3D chromatin structure
Target of assay
25
histone
25
histone modification
13
broad histone mark
narrow histone mark
7
control
4
transcription factor
3
RNA binding protein
3
nucleotide modification
1
chromatin remodeller
Date released
18
May, 2021
13
February, 2023
11
November, 2019
10
December, 2017
6
November, 2020
2
August, 2021
2
March, 2020
1
December, 2019
1
October, 2019
Available data
31
bed narrowPeak
23
bam
20
bigWig
10
bigBed narrowPeak
10
fastq
2
tagAlign
2
tsv
1
bedpe bed3+
1
hic
Organism
63
Homo sapiens
Biosample type
primary cell
39
cell line
13
tissue
12
in vitro differentiated cells
Organ
535
liver
274
heart
254
kidney
242
pancreas
152
connective tissue
134
brain
122
blood vessel
122
vasculature
100
limb
96
bone element
80
adipose tissue
79
artery
68
musculature of body
66
epithelium
60
blood
60
bodily fluid
35
eye
30
nerve
23
spleen
20
lung
18
ureter
embryo
12
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
64
AMP
Genome assembly (visualization)
34
hg19
19
GRCh38
Lab
58
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
37
inconsistent ontology term
1
audit script error
assay_title!
total RNA-seq
biosample_type!
primary cell
organ_slims!
embryo
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
64 results
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Clear Filters
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
RNA microarray
cell line
EndoC_BH1
19
9
6
2
1
1
glomerular visceral epithelial cell
1
tissue
pigmented layer of retina
12
renal glomerulus
1
in vitro differentiated cells
hepatocyte
10
pancreatic PP cell
2
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