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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
69
DNase-seq
64
single cell RNA-seq
total RNA-seq
27
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
151
DNA accessibility
65
Transcription
27
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
narrow histone mark
9
control
8
transcription factor
7
recombinant protein
1
RNA binding protein
Date released
81
August, 2021
68
June, 2019
47
September, 2023
15
April, 2019
14
May, 2023
13
October, 2019
8
February, 2021
3
December, 2019
3
July, 2019
2
March, 2020
Available data
151
bed narrowPeak
98
bam
88
bigWig
80
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
13
tsv
13
txt
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
254
Homo sapiens
Biosample type
239
tissue
primary cell
15
cell line
Organ
535
liver
274
heart
254
kidney
242
pancreas
152
connective tissue
134
brain
122
blood vessel
122
vasculature
100
limb
96
bone element
80
adipose tissue
79
artery
68
musculature of body
66
epithelium
60
blood
60
bodily fluid
35
eye
30
nerve
23
spleen
20
lung
18
ureter
embryo
12
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
207
AMP
47
KPMP
Genome assembly (visualization)
162
GRCh38
89
hg19
Lab
112
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
2
Bing Ren, UCSD
Audit category:
12
inconsistent ontology term
7
audit script error
assay_title!
total RNA-seq
biosample_type!
primary cell
organ_slims!
embryo
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
254 results
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ATAC-seq
DNase-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
RRBS
small RNA-seq
tissue
kidney
75
13
64
17
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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cell line
RCC 7860 HIF1a re-expression
4
RCC 7860 vector
3
1
RCC 7860 HIF2a over-expression
3
HEK293T
2
RCC 7860 VHL
1
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