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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
10
snATAC-seq
total RNA-seq
9
single cell RNA-seq
5
STARR-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
18
DNA binding
11
DNA accessibility
9
Transcription
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
26
August, 2021
19
April, 2020
2
March, 2019
Available data
14
bed narrowPeak
14
bigWig
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
46
Homo sapiens
Biosample type
25
cell line
22
tissue
Organ
22
liver
19
lung
3
pancreas
2
kidney
Project
28
AMP
19
LungMap
Genome assembly (visualization)
17
hg19
1
GRCh38
Lab
2663
AMP-T2D consortium
232
Klaus Kaestner, Upenn
228
Kyle Gaulton, UCSD
93
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
2
Anna Gloyn, Oxford
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_title!
total RNA-seq
biosample_type!
stem cell
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
STARR-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
18
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
lung
10
9
islet of Langerhans
2
1
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