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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
27
snATAC-seq
14
ATAC-seq
12
single cell RNA-seq
8
ChIP-seq
6
WGBS
2
pCHi-C
Assay category
41
DNA accessibility
12
Transcription
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
324
November, 2017
216
May, 2021
134
May, 2022
127
August, 2017
101
May, 2020
69
February, 2021
65
August, 2021
64
October, 2019
62
November, 2018
55
June, 2019
48
July, 2018
47
September, 2018
46
December, 2017
43
April, 2018
43
September, 2020
30
February, 2023
28
December, 2018
24
February, 2018
20
November, 2019
18
January, 2019
18
July, 2019
18
March, 2020
8
January, 2021
8
November, 2020
7
August, 2020
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
December, 2019
Available data
45
fastq
19
bam
15
bed narrowPeak
8
tagAlign
6
bigWig
6
tsv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
69
Homo sapiens
Biosample type
tissue
47
primary cell
18
cell line
4
in vitro differentiated cells
Organ
14
artery
14
blood vessel
14
heart
14
vasculature
6
connective tissue
6
epithelium
6
pancreas
2
liver
Project
45
HPAP
24
AMP
Genome assembly (visualization)
21
hg19
15
GRCh38
Lab
45
Klaus Kaestner, Upenn
24
AMP-T2D consortium
Audit category:
27
audit script error
1
inconsistent replicate
assay_title!
total RNA-seq
biosample_type!
tissue
files.file_type!
vcf
BIOSAMPLE
ASSAY
69 results
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Clear Filters
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
pCHi-C
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
cell line
smooth muscle cell of the coronary artery
8
6
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
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